Bracket-dot annotation of secondary structures are give beneath the corresponding nucleotide position: | |
. | = unpaired nucleotide |
( | = 5' nucleotide in a helix (=stem) |
) | = 3' nucleotide in a helix (=stem) |
[, {, < | = 5' nucleotide in a helix (=stem) that is part of a pseudoknot structure |
], } , > | = 3' nucleotide in a helix (=stem) that is part of a pseudoknot structure |
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